• Kirk JA, Paolocci N. New redox-related arrows in the arsenal of cardiac disease treatment. Antioxidant and Redox Signaling, 2014; 21(14): 1945-1948, PMID: 25211226
  • Kooij V*, Venkatraman V*, Kirk JA, Faber MJ, Ubaida-Mohien C, Graham DR, Van Eyk, JE. Identification of cardiac myofilament protein isoforms using multiple mass spectrometry based approaches. Proteomics – Clinical Applications, 2014; 8(7-8): 578 - 589, PMID: 24974818
  • Kooij V*, Venkatraman V*, Tra J, Kirk JA, Rowell J, Blice-Baum A, Cammarato A, Van Eyk JE. Sizing Up Models of Hear Failure: Proteomics from flies to humans. Proteomics - Clinical Applications. 2014, 8(10): 653-664, PMID: 24723306
  • Agnetti G, Halperin VL, Kirk JA, Chakir K, Guo Yurong, Lund L, Nicolini F, Gherli T, Guarnieri C, Caldarera CM, Tomaselli GF, Kass DA, Van Eyk JE. Desmin Modifications Associate with Amyloid Oligomers Deposition in Heart Failure. Cardiovascular Research, 2014; 102(1): 24-34, PMID: 24413773, PMCID: PMC3958618
  • Kirk JA, Holewinski RJ, Kooij V, Agnetti G, Tunin RS, Witayavanitkul N, de Tombe PP, Gao WD, Van Eyk J, Kass DA. Cardiac Resynchronization Sensitizes the Sarcomere to Calcium by GSK-3β Re-Activation. Journal of Clinical Investigation, 2014; 124(1): 129-139, PMID: 24292707, PMCID: PMC3871225
  • Kirk JA, Kass DA. Electromechanical Dyssynchrony and Resynchronization of the Failing Heart. Circulation Research, 2013, Aug 30; 113(6): 765-76, PMID: 23989718, PMCID: PMC3874431
  • Kirk JA, Saccomani MP, Shroff SG. A Priori Identifiability Analysis of Cardiovascular Models. Cardiovascular Engineering and Technology, 2013: 4(4): 500-512, PMCID: PMC4696755
  • Kirk JA*, Zhang P*, Murphy AM, Van Eyk JE. Troponin I alterations detected by multiple-reaction monitoring: How might this impact the study of heart failure? Expert Reviews in Proteomics, 2013: 10(1): 5-8, PMID: 23414352, *equal contributions
  • Shroff SG, Kirk JA. Troponin I Phosphorylation and Cardiac Contraction: Insights Provided by Mathematical Model-Based Analysis of Data. 2013 IEEE Engineering in Medicine & Biology Short Papers, No 1462
  • Zhang P, Kirk JA, Ji W, dos Remedios CG, Kass DA, Van Eyk JE, Murphy AM. Multiple reaction monitoring to identify site-specific troponin I phosphorylated residues in the failing human heart. Circulation, 2012: 126: 1828-1837, PMID: 22972900, PMCID: PMC3733556.
  • Rainer PP, Doleschal B, Kirk JA, Sivakumaran V, Maechler H, Hoefler G, Bauernhofer T, Samonigg H, Hutterer G, Kass DA, Pieske B, von Lewinski D, Pichler M. Sunitinib causes dose-dependent negative functional effects on myocardium and cardiomyocytes. British Journal of Urology International, 2012, Nov; 110(10): 1455-62, PMID: 22508007
  • Gupta A, Akki A, Wang Y, Leppo M, Chacko V, Foster DB, Caceres V, Shi S, Kirk JA, Su J, Lai S, Paolocci N, Steenbergen C, Gerstenblith G, Weiss RG. Creatine Kinase-Overexpression Improves Function in Murine Heart Failure, Causal Evidence the Failing Heart is Energy-Starved. Journal of Clinical Investigation, 2012; 122(1): 291–302, PMID: 22201686, PMCID: PMC3248286.
  • Cingolani OH, Kirk JA, Seo K, Koitabashi N, Lee DI, Ramirez-Correa G, Bedja D, Barth AS, Moens AL, Kass DA. Thrombospondin-4 is Required for Stretch-mediated Contractility Augmentation in Cardiac Muscle. Circulation Research, 2011 Dec 9;109(12):1410-4, PMID: 22034490, PMCID: PMC3324097.
  • Clause KC, Tinney JP, Liu LJ, Gharaibeh B, Huard J, Kirk JA, Shroff SG, Fujimoto KL, Wagner WR, Ralphe JC, Keller BB, Tobita K. A three-dimensional gel bioreactor for assessment of cardiomyocyte induction in skeletal muscle derived stem cells. Tissue Eng Part C Methods, 16(3): 375-385, 2010, PMID: 19601695, PMCID: PMC2945363
  • Kirk JA, MacGowan GA, Evans C, Smith SH, Stewart AFR, Solaro RJ, Shroff SG. Left Ventricular and Myocardial Function In Mice Expressing Constitutively Psuedo-Phosphorylated Cardiac Troponin I. Circulation Research, 105(12): 1232- 1239, 2009, PMID: 19850940, PMCID: PMC28625552. 
  • Naghshin J, McGaffin K, Mathier MA, Romano LC, Smith SH, Janczewski AM, Kirk JA, Shroff SG, O’Donnell CP. Chronic Intermittent Hypoxia Increases Left Ventricular Contractility in C57BL/6J Mice. J Appl Physiol, 107: 787-793, 2009, PMID: 19589954, PMCID: PMC2756000
  • MacGowan GA, Kirk JA, Evans C, Shroff SG. Pressure-Calcium relationships in perfused mouse hearts. Am J Physiol Heart Circ Physiol 290: 2614-2624, 2006, PMID: 16415077.